Qiber3D
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Qiber3D
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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X
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Z
A
add_points() (Qiber3D.helper.PointLookUp method)
animation() (Qiber3D.Render method)
animation_height (Qiber3D.config.render attribute)
app_author (in module Qiber3D.config)
app_name (in module Qiber3D.config)
apply (Qiber3D.config.extract.median attribute)
(Qiber3D.config.extract.morph attribute)
(Qiber3D.config.extract.smooth attribute)
(Qiber3D.config.extract.z_drop attribute)
B
background (Qiber3D.config.render attribute)
binary() (Qiber3D.IO.export static method)
(Qiber3D.IO.load static method)
C
clean() (Qiber3D.Reconstruct class method)
color (Qiber3D.config.render attribute)
compare() (Qiber3D.Render method)
const (Qiber3D.config.extract.teasar attribute)
core_count (in module Qiber3D.config)
create_base_network() (Qiber3D.Reconstruct class method)
csv() (Qiber3D.IO.export static method)
D
directions() (Qiber3D.Figure method)
distance_voxel_overlap (Qiber3D.config.extract.thinning attribute)
dpi (Qiber3D.config.figure attribute)
dust_threshold (Qiber3D.config.extract.teasar attribute)
E
Example (class in Qiber3D.helper)
export (class in Qiber3D.IO)
export() (Qiber3D.Network method)
export_image_stack() (Qiber3D.Render method)
export_intensity_projection() (Qiber3D.Render method)
export_x3d() (Qiber3D.Render method)
extract (class in Qiber3D.config)
extract.binary (class in Qiber3D.config)
extract.isotropic_resampling (class in Qiber3D.config)
extract.median (class in Qiber3D.config)
extract.morph (class in Qiber3D.config)
extract.smooth (class in Qiber3D.config)
extract.teasar (class in Qiber3D.config)
extract.thinning (class in Qiber3D.config)
extract.z_drop (class in Qiber3D.config)
Extractor (class in Qiber3D)
F
ffmpeg_path (Qiber3D.config.render attribute)
Fiber (class in Qiber3D)
Figure (class in Qiber3D)
figure (class in Qiber3D.config)
Filter (class in Qiber3D)
footprint (Qiber3D.config.extract.median attribute)
format (Qiber3D.config.figure attribute)
G
get_network() (Qiber3D.Extractor method)
(Qiber3D.Reconstruct class method)
grid_color (Qiber3D.config.figure attribute)
grid_lw (Qiber3D.config.figure attribute)
H
histogram() (Qiber3D.Figure method)
I
image() (Qiber3D.IO.load static method)
image_resolution (Qiber3D.config.render attribute)
invert (Qiber3D.config.extract attribute)
iterations (Qiber3D.config.extract.morph attribute)
J
json() (Qiber3D.IO.export static method)
(Qiber3D.IO.load static method)
L
length() (Qiber3D.Filter static method)
load (class in Qiber3D.IO)
load() (Qiber3D.helper.NumpyMemoryManager class method)
(Qiber3D.Network static method)
load_example() (Qiber3D.helper.Example class method)
log_level (in module Qiber3D.config)
LookUp (class in Qiber3D.helper)
low_memory (Qiber3D.config.extract attribute)
M
max_paths (Qiber3D.config.extract.teasar attribute)
module
Qiber3D.config
mv3d() (Qiber3D.IO.export static method)
(Qiber3D.IO.load static method)
N
nd2() (Qiber3D.helper.Example class method)
(Qiber3D.IO.load static method)
nd2_channel_name (Qiber3D.config.extract attribute)
Network (class in Qiber3D)
network() (Qiber3D.IO.load static method)
notebook (Qiber3D.config.render attribute)
ntr() (Qiber3D.IO.load static method)
NumpyMemoryManager (class in Qiber3D.helper)
O
overview() (Qiber3D.Render method)
P
pdrf_exponent (Qiber3D.config.extract.teasar attribute)
pdrf_scale (Qiber3D.config.extract.teasar attribute)
PointLookUp (class in Qiber3D.helper)
prepare() (Qiber3D.Extractor method)
Q
Qiber3D.config
module
R
Reconstruct (class in Qiber3D)
reconstruct() (Qiber3D.Extractor method)
remove_vol (Qiber3D.config.extract.morph attribute)
Render (class in Qiber3D)
render (class in Qiber3D.config)
rgba (Qiber3D.config.render attribute)
S
save() (Qiber3D.helper.NumpyMemoryManager method)
(Qiber3D.Network method)
save_3d_image() (Qiber3D.Render class method)
save_steps (Qiber3D.config.extract attribute)
scale (Qiber3D.config.extract.teasar attribute)
Segment (class in Qiber3D)
show() (Qiber3D.Render method)
show_3d_image() (Qiber3D.Render static method)
sigma (Qiber3D.config.extract.smooth attribute)
size (Qiber3D.config.extract.median attribute)
sliver_threshold (Qiber3D.config.extract.thinning attribute)
smooth() (Qiber3D.Reconstruct class method)
soma_acceptance_threshold (Qiber3D.config.extract.teasar attribute)
soma_detection_threshold (Qiber3D.config.extract.teasar attribute)
soma_invalidation_const (Qiber3D.config.extract.teasar attribute)
soma_invalidation_scale (Qiber3D.config.extract.teasar attribute)
swc() (Qiber3D.IO.export static method)
(Qiber3D.IO.load static method)
synthetic_network() (Qiber3D.IO.load class method)
T
target (Qiber3D.config.extract.isotropic_resampling attribute)
threshold (Qiber3D.config.extract.binary attribute)
tif() (Qiber3D.IO.export static method)
tiff() (Qiber3D.helper.Example class method)
tiff_c2() (Qiber3D.helper.Example class method)
tiff_c2_red() (Qiber3D.helper.Example class method)
truncate (Qiber3D.config.extract.smooth attribute)
U
url (in module Qiber3D.config)
use_teasar (Qiber3D.config.extract attribute)
V
version (in module Qiber3D.config)
version_number (in module Qiber3D.config)
volume() (Qiber3D.Filter static method)
volume_ratio() (Qiber3D.Filter static method)
voxel_per_point (Qiber3D.config.extract.thinning attribute)
voxel_size (Qiber3D.config.extract attribute)
X
x3d() (Qiber3D.IO.export static method)
xlsx() (Qiber3D.IO.export static method)
Z
z_drop() (Qiber3D.Figure method)
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