Extractor¶
- class Qiber3D.Extractor(input_path, channel=None, voxel_size=None)¶
Bases:
object
Create a
Qiber3D.Network
from an image stack withget_network()
. Apply filter as set inQiber3D.config
.- Parameters
input_path (str, Path) – file path to input file
channel (int, str) – channel name or index
voxel_size (list(float)) – size of a voxel in each axis
- Variables
storage (
Qiber3D.helper.NumpyMemoryManager
) – storage for extraction stepsprocessing_data (dict) – extra information on the image processing
z_spacing (float) – voxel size along z-axis
xy_spacing (float) – voxel size along x/y-axis
- Ivar:net
generated network
- get_network()¶
- Returns
Network from prepared image stack
- Return type
- prepare()¶
Load and prepare an image stack for reconstruction.
- reconstruct()¶
Reconstruct the network from the prepared image stack.